Package: rGEDI 0.6.0

Carlos Alberto Silva

rGEDI: NASA's Global Ecosystem Dynamics Investigation (GEDI) Data Visualization and Processing

Tools for finding, downloading, reading, visualizing, sampling, modeling, and processing NASA Global Ecosystem Dynamics Investigation (GEDI) Level 1B, Level 2A, Level 2B, Level 3, Level 4A, and Level 4B data. Supports local files, NASA Earthdata Cloud access, and optional Google Earth Engine workflows for ancillary-data extraction and wall-to-wall mapping.

Authors:Carlos Alberto Silva [aut, cph, cre], Caio Hamamura [aut, cph], Ruben Valbuena [aut, ctb], Steven Hancock [aut, ctb], Adrian Cardil [aut, ctb], Eben North Broadbent [aut, ctb], Danilo Roberti Alves de Almeida [aut, ctb], Celso H. L. Silva Junior [aut, ctb], Carine Klauberg [aut, ctb]

rGEDI_0.6.0.tar.gz
rGEDI_0.6.0.zip(r-4.7-any)rGEDI_0.6.0.zip(r-4.6-any)rGEDI_0.6.0.zip(r-4.5-any)
rGEDI_0.6.0.tgz(r-4.6-any)rGEDI_0.6.0.tgz(r-4.5-any)
rGEDI_0.6.0.tar.gz(r-4.7-any)rGEDI_0.6.0.tar.gz(r-4.6-any)
rGEDI_0.6.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rGEDI/json (API)

# Install 'rGEDI' in R:
install.packages('rGEDI', repos = c('https://caiohamamura.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/carlos-alberto-silva/rgedi/issues

On CRAN:

Conda:

6.01 score 186 stars 1 packages 92 scripts 30 downloads 114 exports 39 dependencies

Last updated from:b06cffb4d5. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develOK245
source / vignettesOK197
linux-releaseOK354
macos-releaseOK254
macos-oldrelOK166
windows-develOK238
windows-releaseOK162
windows-oldrelOK245
wasm-releaseOK141

Exports:addEEImageaggregateLevel3aggregateLevel4Baspectbuild_ee_forestclipclipLevel1BclipLevel1BGeoclipLevel1BGeoGeometryclipLevel1BGeometryclipLevel2AclipLevel2AGeometryclipLevel2AMclipLevel2AMGeometryclipLevel2BclipLevel2BGeometryclipLevel2BPAIProfileclipLevel2BPAIProfileGeometryclipLevel2BPAVDProfileclipLevel2BPAVDProfileGeometryclipLevel2BVPMclipLevel2BVPMGeometryclipLevel3clipLevel4AclipLevel4AGeometryclipLevel4BclosedownloadGEDIearthdata_loginearthdata_s3_credentialsee_build_AlphaEarth_embedding_terrain_stackee_build_hls_s1c_terrain_stackee_check_task_statusee_image_to_driveee_initializeee_rect_to_sfext_to_eeextractEEextractGEDIAncillaryextractLevel3extractLevel4Bfit_metricsfit_modelgedi.fullwaveformgedi.level1bgedi.level2agedi.level2bgedi.level4agediDownloadgediEEgedifindergediWFMetricsgediWFSimulatorgeomSamplingget_catalog_idgetGEDITrackgetLevel1BGeogetLevel1BWFgetLevel2AMgetLevel2BPAIProfilegetLevel2BPAVDProfilegetLevel2BVPMgetLevel4AgetTileUrlglcmTexturegridSamplinggridStatsLevel2AMgridStatsLevel2BVPMgridStatsLevel4Amap_createmap_downloadmap_viewmosaicLevel3mosaicLevel4BopenGEDIplotplot_gedi_orbit_animationplotLevel3plotLevel4AplotLevel4BplotPAIProfileplotPAVDProfileplotWFMetricspolyStatsLevel2AMpolyStatsLevel2BVPMpolyStatsLevel3polyStatsLevel4ApolyStatsLevel4BpredictGEDIpredictGEDIH5projectLevel3projectLevel4BrandomSamplingrasterizeGEDIrasterizeLevel4ArasterSamplingreadGEDICloudreadLevel1BreadLevel2AreadLevel2BreadLevel3readLevel4AreadLevel4BresampleLevel3resampleLevel4BrGEDI_configuresampleGEDIsearch_datasetsslopespacedSamplingstratifiedSamplingto_vectvarSelvect_as_ee

Dependencies:bitbit64classclassIntclicpp11curldata.tableDBIe1071farverfsgetPassggplot2gluegtablehdf5risobandjsonliteKernSmoothlabelinglazyevallifecycleproxyR6RColorBrewerRcpprlangrstudioapis2S7scalessfterraunitsvctrsviridisLitewithrwk

Readme and manuals

Help Manual

Help pageTopics
rGEDI: An R Package for NASA's Global Ecosystem Dynamics Investigation (GEDI) Data Visualizing and Processing.rGEDI-package
Add an Earth Engine image to a Leaflet mapaddEEImage
Aggregate a GEDI Level 3 rasteraggregateLevel3
Aggregate a GEDI Level 4B rasteraggregateLevel4B
Earth Engine terrain aspectaspect
Train a regression forest in Earth Enginebuild_ee_forest
Clip GEDI data with a common interfaceclip clip,data.frame,ANY-method clip,data.frame,numeric-method clip,data.frame,SpatExtent-method clip,gedi.level1b,ANY-method clip,gedi.level1b,numeric-method clip,gedi.level1b,SpatExtent-method clip,gedi.level2a,ANY-method clip,gedi.level2a,numeric-method clip,gedi.level2a,SpatExtent-method clip,gedi.level2b,ANY-method clip,gedi.level2b,numeric-method clip,gedi.level2b,SpatExtent-method clip,gedi.level4a,ANY-method clip,gedi.level4a,numeric-method clip,gedi.level4a,SpatExtent-method clip,SpatRaster,ANY-method
Clip GEDI Level1B data by CoordinatesclipLevel1B
Clip GEDI Full Waveform Geolocations by CoordinatesclipLevel1BGeo
Clip GEDI Full Waveform Geolocations by geometryclipLevel1BGeoGeometry
Clip GEDI Level1B data by geometryclipLevel1BGeometry
Clip GEDI Level2A data by CoordinatesclipLevel2A
Clip GEDI Level2A data by geometryclipLevel2AGeometry
Clip GEDI Elevation and Height Metrics by CoordinatesclipLevel2AM
Clip GEDI Elevation and Height Metrics by CoordinatesclipLevel2AMGeometry
Clip GEDI Level2B data by CoordinatesclipLevel2B
Clip GEDI Level2B data by geometryclipLevel2BGeometry
Clip GEDI Plant Area Index profile by CoordinatesclipLevel2BPAIProfile
Clip GEDI Plant Area Index profile by geometryclipLevel2BPAIProfileGeometry
Clip GEDI Plant Area Volume Density profile by CoordinatesclipLevel2BPAVDProfile
Clip GEDI Plant Area Volume Density profile by geometryclipLevel2BPAVDProfileGeometry
Clip GEDI Canopy Cover and Vertical Profile Metrics by CoordinatesclipLevel2BVPM
Clip GEDI Canopy Cover and Vertical Profile Metrics by geometryclipLevel2BVPMGeometry
Clip a GEDI Level 3 rasterclipLevel3
Clip GEDI Level 4A data by an extentclipLevel4A
Clip GEDI Level 4A data by polygonsclipLevel4AGeometry
Clip a GEDI Level 4B rasterclipLevel4B
Safely closes the 'gedi.level1b'close,gedi.level1b-method close,gedi.level2a-method close,gedi.level2b-method close,gedi.level4a-method
Close a cloud HDF5 connectionclose.gedi.cloud_h5
Authenticate with NASA Earthdataearthdata_login
Configure temporary NASA Earthdata S3 credentialsearthdata_s3_credentials
Build an AlphaEarth and terrain predictor stackee_build_AlphaEarth_embedding_terrain_stack
Build an HLS and terrain predictor stack in Earth Engineee_build_hls_s1c_terrain_stack
Check an Earth Engine taskee_check_task_status
Export an Earth Engine image to Google Driveee_image_to_drive
Initialize Google Earth Engineee_initialize
Convert an Earth Engine rectangle to 'sf'ee_rect_to_sf
Convert an extent to an Earth Engine geometryext_to_ee
Extract Earth Engine image values at GEDI footprintsextractEE extractGEDIAncillary
Extract GEDI Level 3 raster valuesextractLevel3
Extract GEDI Level 4B raster valuesextractLevel4B
Model fit metricsfit_metrics
Fit a GEDI statistical or random-forest modelfit_model
Class for GEDI level1B Full Waveformgedi.fullwaveform gedi.fullwaveform-class
Class for GEDI level1Bgedi.level1b gedi.level1b-class
Class for GEDI level2Agedi.level2a gedi.level2a-class
Class for GEDI level2Bgedi.level2b gedi.level2b-class
Class for GEDI Level 4A footprint biomass datagedi.level4a gedi.level4a-class
Download GEDI datadownloadGEDI gediDownload
Open a GEDI product in Google Earth EnginegediEE
Find GEDI granules through NASA CMRgedifinder
Compute metrics from GEDI or simulated full waveformsgediWFMetrics
Simulate GEDI-like full waveforms from airborne laser scanning datagediWFSimulator
GEDI polygon-stratified sampling specificationgeomSampling
Return an Earth Engine catalog IDget_catalog_id
Extract a GEDI reference ground trackgetGEDITrack
Get GEDI Full Waveform Geolocations (GEDI Level1B)getLevel1BGeo
Get GEDI Pulse Full Waveform (GEDI Level1B)getLevel1BWF
Get GEDI Elevation and Height Metrics (GEDI Level2A)getLevel2AM
Get GEDI Plant Area Index (PAI) Profile (GEDI Level2B)getLevel2BPAIProfile
Get GEDI Plant Area Volume Density (PAVD) Index Profile (GEDI Level2B)getLevel2BPAVDProfile
Get GEDI Canopy Cover and Vertical Profile Metrics (GEDI Level2B)getLevel2BVPM
Extract GEDI Level 4A footprint metricsgetLevel4A
Get an Earth Engine image tile URLgetTileUrl
Earth Engine gray-level co-occurrence texturesglcmTexture
GEDI grid-stratified sampling specificationgridSampling
Compute Grids with Descriptive Statistics of GEDI derived Elevation and Height Metrics (Level2A)gridStatsLevel2AM
Compute Grids with Descriptive Statistics of GEDI derived Canopy Cover and Vertical Profile Metrics (Level2B)gridStatsLevel2BVPM
Grid GEDI Level 4A footprint metricsgridStatsLevel4A
Apply an Earth Engine model to a predictor imagemap_create
Download an Earth Engine imagemap_download
Display Earth Engine layers in Leafletmap_view
Mosaic GEDI Level 3 rastersmosaicLevel3
Mosaic GEDI Level 4B rastersmosaicLevel4B
Open GEDI data from local storage or Earthdata CloudopenGEDI
Animate a GEDI ground track around the Earthplot_gedi_orbit_animation
Plot GEDI* objectplot,gedi.fullwaveform,missing-method
Plot GEDI variable selection resultsplot.gedi_var_selection
Plot GEDI Level 3 metricsplotLevel3
Plot GEDI Level 4A footprint biomassplotLevel4A
Plot GEDI Level 4B metricsplotLevel4B
Plot GEDI Plant Area Index (PAI) ProfileplotPAIProfile
Plot GEDI Plant Area Volume Density ProfileplotPAVDProfile
GEDI full waveform plot with metricsplotWFMetrics
Compute descriptive statistics of GEDI Elevation and Height MetricspolyStatsLevel2AM
Compute descriptive statistics of GEDI Canopy Cover and Vertical Profile MetricspolyStatsLevel2BVPM
Polygon summaries of GEDI Level 3 metricspolyStatsLevel3
Polygon statistics for GEDI Level 4A footprintspolyStatsLevel4A
Polygon summaries of GEDI Level 4B metricspolyStatsLevel4B
Predict GEDI footprint valuespredictGEDI
Predict values and write them to HDF5predictGEDIH5
Project a GEDI Level 3 rasterprojectLevel3
Project a GEDI Level 4B rasterprojectLevel4B
GEDI random sampling specificationrandomSampling
Rasterize GEDI footprint datarasterizeGEDI
Rasterize GEDI Level 4A footprintsrasterizeLevel4A
GEDI raster-stratified sampling specificationrasterSampling
Open a GEDI HDF5 granule through EarthaccessreadGEDICloud
Read GEDI Level1B data (Geolocated Waveforms)readLevel1B
Read GEDI Level2A data (Basic Full Waveform derived Metrics)readLevel2A
Read GEDI Level2B data (Biophysical Variables)readLevel2B
Read GEDI Level 3 gridded metricsreadLevel3
Read a GEDI Level 4A granulereadLevel4A
Read GEDI Level 4B gridded biomassreadLevel4B
Resample a GEDI Level 3 rasterresampleLevel3
Resample a GEDI Level 4B rasterresampleLevel4B
Configure optional rGEDI cloud and Earth Engine supportrGEDI_configure
Sample GEDI footprint observationssampleGEDI
Search the GEDI datasets available in Earth Enginesearch_datasets
Earth Engine terrain slopeslope
GEDI minimum-distance sampling specificationspacedSampling
GEDI attribute-stratified sampling specificationstratifiedSampling
Convert GEDI footprints to a spatial vectorto_vect
Select predictor variables for a GEDI modelvarSel
Convert a vector object to an Earth Engine feature collectionvect_as_ee